rs4232555 SNP Detail

Summary

• ID
  rs4232555
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  111
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:89788641 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

         TGG TTTCCTGCTT CAACAATGCT TGAACTGAAC AGGTGCTTGA CTGACCCCCT
  CCAACCCCCA CTGGCCACTT CGAGCCTGAG CCCTTTGCAA CTTCCTCACT CTGCAGCTCC
  AGTGTCTCCA CTCAGCCTCA CCCCACCACC ACCATGACCA CCATGTCTCC CTCGCAATTG
  Y
  TCCAGAACTA CCACCAGAAC GCAAAGGCTG CCATCAACCT GCCAGATCAA CCTGGAGTTG
  TATGCCTCCT ACATCTGTCT GTCTATGTCT TGCTATTTTG ACAGAGATGA TGTGGCTCTG
  AAGAACTTTC CAAAATACTT TCTCCACCAA TCTCATGAGG AGAGGGAGCA TGATGAGAAA
  CTGATAAAGC TGCAGAACCA ACAAGG                                     
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
ss6395630	AL022624_174	TWGNF	TWGNF-Mouse	f	SNP	T	T	T	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
rs4232555					SNP	T	T	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6395630	AL022624_174	TWGNF	TWGNF-Mouse-2	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:89788641 () rs orientation: reverse

Symbol	Name	Function Class
Fth1-ps	ferritin heavy polypeptide 1, pseudogene	within coordinates
Tssr161463	transcription start site region 161463	324 bp downstream
Tssr161464	transcription start site region 161464	305 bp downstream
Tssr161465	transcription start site region 161465	281 bp downstream
Tssr161466	transcription start site region 161466	252 bp downstream
Tssr161467	transcription start site region 161467	163 bp downstream
Tssr161468	transcription start site region 161468	92 bp downstream
Tssr163758	transcription start site region 163758	315 bp upstream
Tssr163759	transcription start site region 163759	201 bp upstream
Tssr163760	transcription start site region 163760	50 bp upstream
Tssr163761	transcription start site region 163761	196 bp downstream