rs4232608 SNP Detail

Summary

• ID
  rs4232608
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:100311568 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              AACTATTATT GTCACCTAGA
  TCCTTCTTAG TCCTTCAGCT GCTCCTGCTG AGGGCAGGGT GGAGCTCCAA GGTCCTCATG
  TCCAGTGCGA ATGAAGACAT CAAAGCTGGT AGGAAACCTA GGACCAGAGG GAGTTGTTGA
  GAGGAAGGCT ATGGGGAAAG GGCCTGCTAG TGCTCACTAT AATGACTAAA ACGAAGTGTG
  S
  AGAGGGGGAG GGGAAGGCTC TCTGCCTCAC TGCTGCTTCT TCTGACCAAG AATTCTTTTT
  CTTTCACTCC ACTATTTCAT TTTCTTCCCA AACTTAGATT TGATCCTGAC TTCTACAGCC
  CCTGAACACC TCAGTGCTCC TACTCTGCCC CTTCCAGAGG TTCAGTGCTT TGTGTTCAAC
  ATAGAGTACA TGAATTGCAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
ss6395683	U21795_54	TWGNF	TWGNF-Mouse	f	SNP	C	C	C	C	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
rs4232608					SNP	C	C	C	C	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6395683	U21795_54	TWGNF	TWGNF-Mouse-2	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:100311568 () rs orientation: reverse

Symbol	Name	Function Class
Il2rg	interleukin 2 receptor, gamma chain	within coordinates
Rr692812	regulatory region 692812	283 bp proximal
Tssr161640	transcription start site region 161640	1059 bp downstream
Tssr163877	transcription start site region 163877	1687 bp upstream
Tssr163878	transcription start site region 163878	1158 bp upstream
Tssr163879	transcription start site region 163879	587 bp upstream
Tssr163880	transcription start site region 163880	220 bp downstream
Tssr163881	transcription start site region 163881	256 bp downstream