rs4232610 SNP Detail

Summary

• ID
  rs4232610
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:100311244 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CTGGG AGAGACTGCT TGAGGACCCA
  R
  TCAAGTGGGT AGCCAGCTCT TCAGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
ss6395685	U21795_378	TWGNF	TWGNF-Mouse	f	SNP	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
rs4232610					SNP	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6395685	U21795_378	TWGNF	TWGNF-Mouse-2	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:100311244 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Il2rg	interleukin 2 receptor, gamma chain			Intron
				Noncoding-Transcript-Variant
Rr692812	regulatory region 692812			607 bp proximal
Tssr161640	transcription start site region 161640			735 bp downstream
Tssr163875	transcription start site region 163875			1962 bp upstream
Tssr163876	transcription start site region 163876			1907 bp upstream
Tssr163877	transcription start site region 163877			1363 bp upstream
Tssr163878	transcription start site region 163878			834 bp upstream
Tssr163879	transcription start site region 163879			263 bp upstream
Tssr163880	transcription start site region 163880			544 bp downstream
Tssr163881	transcription start site region 163881			580 bp downstream