rs45632491 SNP Detail

Summary

• ID
  rs45632491
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:98853368 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACAACCCCC TCATCTTCAT TATTTTATAG CAGAGGGAAG
  AGAGATGACT TGACTACCTC TAACATGTAA GTATATCAGC AAGAACAAGA ACTAAATGGT
  R
  TCAGCGCTCT CTCAGAGAAG GCCACACCCA TGTGCTCCGA TATTGTTCTG ATCACTTCTC
  TCTTAACTCT TATGTTTAGA ATTGATAGTA ATGAATAAAT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63622706	NES17045868	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45632491					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63622706	NES17045868	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:98853368 () rs orientation: forward

Symbol	Name	Function Class
B430209F14Rik	RIKEN cDNA B430209F14 gene	within coordinates
Cpgi7685	CpG island 7685	1771 bp distal
Gm49450	predicted gene, 49450	1936 bp upstream
Gm56698	predicted gene, 56698	within coordinates
Rr404613	regulatory region 404613	1716 bp downstream
Rr509237	regulatory region 509237	1947 bp distal
Rr509238	regulatory region 509238	1827 bp distal
Rr509239	regulatory region 509239	1294 bp distal
Rr509240	regulatory region 509240	within coordinates
Tssr132971	transcription start site region 132971	1718 bp downstream
Tssr136334	transcription start site region 136334	1968 bp upstream
Tssr136335	transcription start site region 136335	1954 bp upstream
Tssr136336	transcription start site region 136336	1927 bp upstream
Tssr136337	transcription start site region 136337	1896 bp upstream
Tssr136338	transcription start site region 136338	1880 bp upstream
Tssr136339	transcription start site region 136339	1828 bp upstream
Tssr136340	transcription start site region 136340	1811 bp upstream
Tssr136341	transcription start site region 136341	1788 bp upstream
Tssr136342	transcription start site region 136342	1 bp upstream
Tssr136343	transcription start site region 136343	1660 bp downstream
Tuba1a	tubulin, alpha 1A	1986 bp upstream