rs45633065 SNP Detail

Summary

• ID
  rs45633065
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:24791007 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGATC AATGTCTTCC ATTGTTTTAG
  R
  GACGATTATT TGTATGCCCT GTAGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61262556	NES16880305	PERLEGEN	MM_PANEL2	f	SNP	A			G	A	A	A	G	G		A	G	A	A		A
ss146998845	ENSMUSSNP6014911	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G				A
ss323275260	CHEV_10_24634915	CHEVERUD	SCREENING_POP	f	SNP										G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs45633065					SNP	A	A	G	G	A	A	A	G	G	G	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61262556	NES16880305	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:24791007 () rs orientation: forward

Symbol	Name	Function Class
Arg1	arginase, liver	98 bp downstream
Med23	mediator complex subunit 23	1649 bp downstream
Tssr92746	transcription start site region 92746	511 bp upstream
Tssr92747	transcription start site region 92747	584 bp upstream
Tssr97085	transcription start site region 97085	383 bp downstream
Tssr97086	transcription start site region 97086	429 bp downstream
Tssr97087	transcription start site region 97087	463 bp downstream
Tssr97088	transcription start site region 97088	521 bp downstream
Tssr97089	transcription start site region 97089	540 bp downstream
Tssr97090	transcription start site region 97090	571 bp downstream
Tssr97091	transcription start site region 97091	962 bp downstream
Tssr97092	transcription start site region 97092	982 bp downstream
Tssr97093	transcription start site region 97093	1006 bp downstream
Tssr97094	transcription start site region 97094	1022 bp downstream
Tssr97095	transcription start site region 97095	1036 bp downstream
Tssr97096	transcription start site region 97096	1301 bp downstream
Tssr97097	transcription start site region 97097	1575 bp downstream
Tssr97098	transcription start site region 97098	1723 bp downstream