rs45633490 SNP Detail

Summary

• ID
  rs45633490
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:34262245 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGGACTAG CTGGATCATA
  GCTCATAAAT CACCCCCATA TAACCTGTCT GTGTGTCTGT GTATGTATCT ATGTTTGTGT
  GTATATATGT GTATGTGTGT ATATGTATAT GTGTGTATGT ATGTATGTAT ATTCATCCTA
  TCAGTTCTGT TTCTCTAGAG AACTCTGACT AATATATTAC CTCACATGGC TCCAGAAAAA
  K
  GCAGGACAGT AGATGTGAAA GCAAGGATAG CTGCCTCATA TGGAGGATCT GATGGCACAA
  AACCAACTGC ACAGAGCTGG AGAGACAGCT CAACTATTAA AAGCTAGGCT CACAACCCAA
  ACCAACCTGC ACTGTGTGGA GATTTAATAA CACAAACACA GTCCATAGTT CCAAGAACAA
  GTTCCTCCTT TACTGTAAAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61134519	NES16640542	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45633490					SNP	T	T	T	T	T	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61134519	NES16640542	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:34262245 () rs orientation: forward

Symbol	Name	Function Class
Poln	DNA polymerase N	within coordinates
Tssr50627	transcription start site region 50627	880 bp downstream
Tssr50628	transcription start site region 50628	903 bp downstream