rs45633628 SNP Detail

Summary

• ID
  rs45633628
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:7355135 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAGGTATAT GAACTATAAA ATAATAGCAC TTAAAAAAAC
  CTGCAGAGCC ACAGGAAGTA AAGCAATGGT TGAGAACGGA AACAGTGTGG GGTGACATGA
  M
  TCAGTGACAG AGACCCTACT TTCCATGGAT GAAGCCTTGG GTTTTCCTCC AACACCCAGT
  ACAAATAAAG TAAACTCAAT TTTAGAACTC TGCTCAAGAG                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60680453	NES16229704	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45633628					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60680453	NES16229704	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:7355135 () rs orientation: forward

Symbol	Name	Function Class
Mmp12	matrix metallopeptidase 12	within coordinates
Tssr2759	transcription start site region 2759	1589 bp downstream
Tssr83721	transcription start site region 83721	1886 bp downstream
Tssr83722	transcription start site region 83722	1605 bp downstream
Tssr83723	transcription start site region 83723	1558 bp downstream
Tssr83724	transcription start site region 83724	1239 bp downstream
Tssr83725	transcription start site region 83725	1102 bp downstream
Tssr83726	transcription start site region 83726	1007 bp downstream
Tssr83727	transcription start site region 83727	337 bp downstream
Tssr83728	transcription start site region 83728	312 bp downstream
Tssr83729	transcription start site region 83729	303 bp downstream
Tssr83730	transcription start site region 83730	169 bp upstream
Tssr83731	transcription start site region 83731	183 bp upstream
Tssr83732	transcription start site region 83732	224 bp upstream
Tssr83733	transcription start site region 83733	261 bp upstream
Tssr83734	transcription start site region 83734	689 bp upstream
Tssr83735	transcription start site region 83735	711 bp upstream
Tssr88069	transcription start site region 88069	1630 bp upstream
Tssr88070	transcription start site region 88070	357 bp upstream
Tssr88071	transcription start site region 88071	280 bp downstream