rs45633673 SNP Detail

Summary

• ID
  rs45633673
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:84412046 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGCACCTGC GGAGACATCA TTCAAGGGCT TGTCACACAC
  TCTGGGAAAG ACCCAGAGCA TTCTCTTCTG GTGAAATGTC TAGCAGATGT AGAAGCAAGA
  Y
  GGAGACCCCA TGGGGACTGT GCGTCCACAC CCACCTCTGA GCTCCCACCT CACTTTGTGC
  TGTCATGAGA GTAAAAAAAC ACCCTGATTT TACTCTGCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146130395	ENSMUSSNP5555965	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs45633673					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:84412046 () rs orientation: forward

Symbol	Name	Function Class
Gm65799	predicted gene, 65799	1126 bp upstream
Rr531984	regulatory region 531984	1137 bp distal
Rr531985	regulatory region 531985	827 bp distal
Rr531986	regulatory region 531986	within coordinates
Tssr146027	transcription start site region 146027	970 bp downstream
Tssr149628	transcription start site region 149628	1092 bp upstream
Tssr149629	transcription start site region 149629	1785 bp downstream