rs45635596 SNP Detail

Summary

• ID
  rs45635596
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:57397839 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGTAA AACCTAAAAA GAGATTGAAG
  C
  GTTGTACTGC ACCGAGTAAT GAGAG                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss132170447	ENSMUSSNP5503493	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss323682973	CHEV_11_57320515	CHEVERUD	SCREENING_POP	f	SNP		C	C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs45635596					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:57397839 () rs orientation: forward

Symbol	Name	Function Class
Fam114a2	family with sequence similarity 114, member A2	within coordinates
Tssr108113	transcription start site region 108113	28 bp downstream
Tssr108114	transcription start site region 108114	89 bp downstream
Tssr108115	transcription start site region 108115	97 bp downstream
Tssr108116	transcription start site region 108116	116 bp downstream