rs45636007 SNP Detail

Summary

• ID
  rs45636007
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:141431260 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTATCTAA CATGTTGGTG
  ATGTTGTATC TCTTTGTAAA ATGGAATGAC TGGTATGCTT CTCCCTCCGC TCATGTCAGG
  AAGCTTTAAG CTGTGAACTG CAGGGTGGAG ACAGAAGCAT CACCTTCTGA CTAAAATCTA
  CTGCTTAGGT TTGGCCTGTG GGCACACTAG GTTGAAAAGG CTACTGAGCA CACATTCAGA
  S
  TCCATAGAAA GGAATAGTTG ATTAGTTATG GCCATTTGAG CCATAAAGAA AGGCAGCGGT
  ACCAACTATC TGCCATTCCT ACTCTAAGGA AGAAACAGAT AATAATTGAC CATGACAGCT
  TCCTGCTGTG CCTGACAGAG CTTCAGGCTT CTGGACATAG CTTTGGGCTT CTGGACACAG
  CCATCAGAGC AATTAATGAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61091297	NES16613387	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C		G	C	C	G		C
ss320994765	CHEV_3_141388463	CHEVERUD	SCREENING_POP	f	SNP											G					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs45636007					SNP	C	C	C	C	C	C	C	C	C	C	G	G	C	C	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61091297	NES16613387	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141431260 () rs orientation: forward

Symbol	Name	Function Class
Unc5c	unc-5 netrin receptor C	within coordinates