rs45637689 SNP Detail

Summary

• ID
  rs45637689
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:44288853 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGATGATCC CGTTTTATGG
  CTAGTGGAAA TTTAAACTAC TTATAGCCAT TATGGAGATC TATATGGAGG TTTCTCCAAA
  GCTTATGACC CTACAGCTAT ACTTTTGGGC ATATACTCAA AGAATTCTCT ATCCTACCAC
  TGAGATCCCT GCACACTCAC ATTCATTACT GCTCTCTTCC CAAAAGCTAG GAAACAGAAT
  Y
  AATCTAGATG TTTATCAATA GATGACTGAA TAAAGGAAAG CTACACAGAT GCACGTATAT
  GAAATGCATT ATATTCAGCT GTAAAGAAAA TGAGATTTGC AGAAAAATGG ACAGCTCTAA
  TCTTGGTTGT CAACTTCATA GGATCCCAAA TCATCTTTTT TTTTTTAAGA TTTATTTATT
  TATTATATGT AAGTCACTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss147795873	ENSMUSSNP1000936	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs45637689					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:44288853 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7073	CpG island 7073	1870 bp proximal
Nudcd1	NudC domain containing 1	within coordinates
Rr302868	regulatory region 302868	1653 bp distal
Rr309746	regulatory region 309746	1658 bp distal
Rr311712	regulatory region 311712	747 bp proximal
Tssr131224	transcription start site region 131224	1943 bp upstream