rs45637903 SNP Detail

Summary

• ID
  rs45637903
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:59952310 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGTGTCTT CCCTTAAGGA
  ATTGGATGTG TAAATAAGGC AGAGGGAAGC ATAAACCTTA CATGGCTGGA TGTCACCAGA
  GCAACGCTAG ACTCTCCAAG GTAGGCTAAG CAGGTGAGGG CGGGGTTGGA AAGGAGCTGG
  GTTGTGACAG ACAACTGAGG TCTGGGGTCA GATGTGGATA CATGTGCAGA GCGGAGAAGG
  Y
  AGCTGTGCAA AGCCATGGCC TACTGAGAGA CCCCTGGGTG GACAGTGGAC GCAGTGGCCA
  GACACAGATG AAAAGATGAA CCTTCTTCTG GAGGTGTTGG GGAACCAGGG AAGGGTTTCT
  AAATGTAACA TTTATAGTGA TCCCCTCCTT TCCTATAAAA GCAATAGGTG TTCATTGTAG
  AAAATTTTGA AGATGGAGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss52322444	NES15286482	PERLEGEN	MM_PANEL2	f	SNP	T		T	T		C
ss323323888	CHEV_10_59579236	CHEVERUD	SCREENING_POP	f	SNP		T			C
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs45637903					SNP	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52322444	NES15286482	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:59952310 () rs orientation: forward

Symbol	Name	Function Class
Gm51801	predicted gene, 51801	within coordinates
Gm66809	predicted gene, 66809	717 bp upstream
Rr219869	regulatory region 219869	1691 bp proximal
Spock2	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 2	within coordinates
Tssr93522	transcription start site region 93522	696 bp downstream