rs45638182 SNP Detail

Summary

• ID
  rs45638182
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:183850352 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTCA GTTTGCCAGA TGCACACAGC
  Y
  GGCCAGAAAG TCTTGTTGTG GGTAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss146417575	ENSMUSSNP142941	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		C
ss320165989	CHEV_1_185942034	CHEVERUD	SCREENING_POP	f	SNP			C		T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs45638182					SNP	T	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:183850352 () rs orientation: forward

Symbol	Name	Function Class
Gm69596	predicted gene, 69596	119 bp upstream
Rr425179	regulatory region 425179	within coordinates
Rr425180	regulatory region 425180	130 bp proximal
Tssr10581	transcription start site region 10581	117 bp upstream