rs45638430 SNP Detail

Summary

• ID
  rs45638430
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:106553156 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACTGAGTA AACACTTAAG
  CCTCCCGCCT TTAGATCATC TCCACCCCAG ACCAACAGTC CTGACAGAGA TATTGTCCTC
  CACAACAAAC AAAACAAGGT AGATACAGGC AACAGAAGTG TGTGAGAGAC ACTGAATACT
  GTTGTCCGTC TCTCCAGAAT CCAAACAGCC CAGCCTGGAG CCCAGGGGAA GGAAGTGGCA
  R
  AAATGGAAGT CACCAACAAC AACTTTAGCA CACAGCGCCT AGCCCAGTCC CGGGATGACT
  GGCAGCCAGG CAGCCCATGC ACTTACTGTG GCAATGTTAC CACCTCTTTT TGCAAAAAAA
  AGACTGAAAC TAAGCCGTGG TAAAGGGCCT AGCATAAATT GGAGCCAGCT CAGGAAAGAA
  GGGTGGCCCT GAAGTGGAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60658918	NES16259107	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	G	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45638430					SNP	A	A	A	A	A	A	A	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60658918	NES16259107	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:106553156 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20953	CpG island 20953	367 bp proximal
Ranbp10	RAN binding protein 10	Intron
Rr401097	regulatory region 401097	555 bp upstream
Rr669015	regulatory region 669015	1380 bp distal
Rr669016	regulatory region 669016	816 bp proximal
Rr669017	regulatory region 669017	1231 bp proximal
Tsnaxip1	translin-associated factor X (Tsnax) interacting protein 1	1207 bp upstream
Tssr79188	transcription start site region 79188	1197 bp upstream
Tssr79189	transcription start site region 79189	1229 bp upstream
Tssr79190	transcription start site region 79190	1246 bp upstream
Tssr82694	transcription start site region 82694	192 bp upstream
Tssr82695	transcription start site region 82695	666 bp downstream
Tssr82696	transcription start site region 82696	1069 bp downstream
Tssr82697	transcription start site region 82697	1093 bp downstream
Tssr82698	transcription start site region 82698	1118 bp downstream
Tssr82699	transcription start site region 82699	1156 bp downstream