rs45640649 SNP Detail

Summary

• ID
  rs45640649
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:43671853 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTGAGTTT GTTTGCCTTT
  GGCTAGAGGA TAGCAACCCA TATAAGTGCA TGAAGCACAA GGTCTGATTC TTGTTTTCTT
  TGGAGGAACC TCTCGTTAGA GGTTATGTGT TTTGGCTTCT GTGTGATGAA GGGGGAAATA
  TTTGTGGGCT GACTTGTCCT TTTGTCTTTT CCCTACTGTG CAAACCTCGA CCATAATTGT
  Y
  TTAATCCACT TTCAAGTTTT GGAGTGAGAA ATATACCAAG GTGGATAGAG AATATGGTAG
  CGGCAATACA GGCGTTTCTT ATTTACATGC CCGTGCATTA TAAATGAAAA CCAAACCCCC
  AAACAGAAAT GTTGTTCAGG GATCTGGTGG ACATCCGTGT TGTTTTCTAG ATCTTCCTTG
  CTCTTTCTGA GATTTCCTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62737769	NES17343022	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45640649					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62737769	NES17343022	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:43671853 () rs orientation: forward

Symbol	Name	Function Class
Adgrf5	adhesion G protein-coupled receptor F5	within coordinates
Rr527086	regulatory region 527086	501 bp distal
Rr527087	regulatory region 527087	107 bp distal
Rr527088	regulatory region 527088	1474 bp proximal
Tssr144671	transcription start site region 144671	932 bp downstream
Tssr144672	transcription start site region 144672	626 bp downstream
Tssr144673	transcription start site region 144673	580 bp downstream
Tssr144674	transcription start site region 144674	553 bp downstream
Tssr144675	transcription start site region 144675	506 bp downstream
Tssr148115	transcription start site region 148115	389 bp downstream