rs45641045 SNP Detail

Summary

• ID
  rs45641045
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:106104660 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAATGTAT GTTTCTCCAG
  GTTAGCTCTG TTTCGATTGA ATTTAGGGCA GGTGGCTCGC ATGTCTCCAG CTAATTTTTG
  AGCTATTATT TTCCATATGG TGGCAGAGAT AGCAGGAGTG AGCTTGCGCC ATAGGAAGTC
  AACAAAGGAT GTGATTGCGG TGGCACCTTG GCAGGAGATC TTAAAACTAA TAAAAAAATG
  A
  TCTTTCTTTC TCTCCAGATA GTTCACAGGG TCATTTGCAG TCTTGAATGC CTCGTGCATT
  TTCTTGAAAT CCTTGGATGC TCTTTGGAAT AAGTACAAGG ATAAGTCAAT GATGTAGTCT
  CTGGTAAATG TGTAGTCTCC CTCACAGGGT TCAGATTTCA GCTCATTTTC TATGATCTTC
  AAGATTTCAT GAAAGTAATT                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss145614799	ENSMUSSNP1052487	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	A/J
rs45641045					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:106104660 () rs orientation: forward

Symbol	Name	Function Class
Gm72977	predicted gene, 72977	within coordinates
Gvin-ps7	GTPase, very large interferon inducible, pseudogene 7	within coordinates
Tssr68401	transcription start site region 68401	1815 bp downstream
Tssr74117	transcription start site region 74117	1927 bp upstream
Tssr74118	transcription start site region 74118	1880 bp upstream
Tssr74119	transcription start site region 74119	1482 bp upstream
Tssr74120	transcription start site region 74120	1465 bp upstream
Tssr74121	transcription start site region 74121	1402 bp upstream
Tssr74122	transcription start site region 74122	1385 bp upstream
Tssr74123	transcription start site region 74123	1352 bp upstream
Tssr74124	transcription start site region 74124	1307 bp upstream
Tssr74125	transcription start site region 74125	1296 bp upstream
Tssr74126	transcription start site region 74126	1260 bp upstream
Tssr74127	transcription start site region 74127	1109 bp upstream
Tssr74128	transcription start site region 74128	1029 bp upstream
Tssr74129	transcription start site region 74129	498 bp upstream
Tssr74130	transcription start site region 74130	449 bp upstream
Tssr74131	transcription start site region 74131	238 bp upstream
Tssr74132	transcription start site region 74132	62 bp upstream
Tssr74133	transcription start site region 74133	587 bp downstream
Tssr74134	transcription start site region 74134	814 bp downstream
Tssr74135	transcription start site region 74135	897 bp downstream
Tssr74136	transcription start site region 74136	965 bp downstream
Tssr74137	transcription start site region 74137	1031 bp downstream
Tssr74138	transcription start site region 74138	1061 bp downstream
Tssr74139	transcription start site region 74139	1095 bp downstream
Tssr74140	transcription start site region 74140	1150 bp downstream
Tssr74141	transcription start site region 74141	1550 bp downstream
Tssr74142	transcription start site region 74142	1693 bp downstream