rs45641285 SNP Detail

Summary

• ID
  rs45641285
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:37724398 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTCG GAAGTCTGTC TAACTGAACA
  T
  CCTTACTGTT CTTAGGAATG GCTAT                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss134810610	ENSMUSSNP6523353	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss320711630	CHEV_3_37569171	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs45641285					SNP	T	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37724398 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13101	CpG island 13101	911 bp distal
Rr406863	regulatory region 406863	1651 bp proximal
Rr575537	regulatory region 575537	1980 bp proximal
Tssr28922	transcription start site region 28922	1415 bp downstream