rs45641790 SNP Detail

Summary

• ID
  rs45641790
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:127701856 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCGTCGACC TTTTCTTTCC
  GAGTGACCCC CACTTTACGG CGTCTCCCAA TGACAAGAGG CGCAGAGCAT TGTGGTCCCG
  CGGGTCCGAG AGAGAGAAAG GGGAGGGAGG CCGGAAAGAG AAAGCAAAAG ACCAGCGCGA
  GCCGGCAGGG CGGGTCCCTG CGCGTGCGCG TGGGTAGCAG CAGGCCCGGA AAAGGCGTGG
  S
  CCACCCTACG GAGAGCACAT TGGGGCGGGG CCTCGACACA TTGGCGCGGA GTCCCGGAGG
  CAGGCGGGGA GGGGGCGGGC TCAGGGCGCG GGCGGAGGAG GAAGTGTCAT GGCGTCGGGC
  CGTGGAGCTT CTTCTCGCTG GTTCTTTACT CGGGAACAGC TGGAGAACAC GCCGAGCCGC
  CGCTGCGGAG TGGAAGCGGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60798953	NES16471946	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45641790					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60798953	NES16471946	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:127701856 () rs orientation: forward

Symbol	Name	Function Class
2900009J06Rik	RIKEN cDNA 2900009J06 gene	65 bp upstream
Ccnt2	cyclin T2	45 bp upstream
Cpgi690	CpG island 690	within coordinates
Rr396250	regulatory region 396250	within coordinates
Rr417683	regulatory region 417683	265 bp distal
Rr417684	regulatory region 417684	within coordinates
Rr417685	regulatory region 417685	745 bp proximal
Tssr8489	transcription start site region 8489	64 bp upstream
Tssr8490	transcription start site region 8490	122 bp upstream