rs45642347 SNP Detail

Summary

• ID
  rs45642347
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:103205771 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTATGTGTA TTTCTCTCCC
  ACACATTCCG ATGATTTTAT ATTACCCTAC CAAGTTTAAA ATTAAACCTA CCAACTACTT
  TTCTCCAAGT GAAACTTGAT GTCCGTTCCT TTTGTGTTGC TAGAAGACAT ACATTAACAA
  AGTTTGAAAG AAAGTTAGTG TCTCTGTGTT TAATATTAAA GGATATATTA TTGCACATTA
  M
  CTGGTTGGTT TAAGAATTAC TGTATAATTC CAATATATAT TAACCCAAGG TGAGATTTTT
  TAATGGTATT TTAAAGGTCT TCTTATATGT TTCTGGAAGA GGAGTGTTTT GTCATCTAAT
  TAACAGTAAA TAGGGAGTTT TTAAAACTAG ATGATTTTAG CTCAAAATAA AGACAGGACG
  CCTTTCTATA AATTATTGAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52209737	NES15330465	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45642347					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52209737	NES15330465	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:103205771 () rs orientation: forward

Symbol	Name	Function Class
6430590A10Rik	RIKEN cDNA 6430590A10 gene	641 bp upstream
Cpgi2165	CpG island 2165	945 bp distal
Gm66970	predicted gene, 66970	1244 bp upstream
Rr385217	regulatory region 385217	within coordinates
Rr438424	regulatory region 438424	1447 bp distal
Rr438425	regulatory region 438425	946 bp distal
Slc6a15	solute carrier family 6 (neurotransmitter transporter), member 15	within coordinates
Tssr95607	transcription start site region 95607	564 bp downstream
Tssr95608	transcription start site region 95608	529 bp downstream
Tssr99159	transcription start site region 99159	841 bp upstream