rs45642372 SNP Detail

Summary

• ID
  rs45642372
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:76300313 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGAACAGCT GTCTGAATCC AGACATCTCA GGGACAGCTT
  GTAAGGAGGC AGTTGTCTGA ATCCAGCCAT CTCAAGGACA ACTTCTCCAT CTTGTTGGCA
  R
  GGTCAAACAA CCTAGGAGCG AACACCTACC CCACTTCTCC AAATGTTTTC TTAACTGTCT
  GTTAACAGGT AAAGAATATA GAAATTGCTG TTTTTCTAAA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61648671	NES17600848	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	A	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45642372					SNP	G	A	G	A	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61648671	NES17600848	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:76300313 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4777	CpG island 4777	1348 bp proximal
Gm47525	predicted gene, 47525	636 bp downstream
Mthfd1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase	1759 bp upstream
Rr403350	regulatory region 403350	1506 bp upstream
Rr468112	regulatory region 468112	1269 bp proximal
Tssr113934	transcription start site region 113934	1670 bp upstream
Tssr113935	transcription start site region 113935	1705 bp upstream
Tssr113936	transcription start site region 113936	1751 bp upstream
Tssr113937	transcription start site region 113937	1793 bp upstream
Tssr113938	transcription start site region 113938	1809 bp upstream
Tssr113939	transcription start site region 113939	1832 bp upstream
Tssr113940	transcription start site region 113940	1914 bp upstream
Tssr113941	transcription start site region 113941	1944 bp upstream
Tssr116711	transcription start site region 116711	1507 bp downstream
Tssr116712	transcription start site region 116712	1533 bp downstream