rs45642849 SNP Detail

Summary

• ID
  rs45642849
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:130489453 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACAACGCAAG ATGGAACTTA CCGACGTACA GATCAAGTTA
  ATTCAGTTAG GCTGGTTCTG GTGGCATACT TGATCCCTGC ACTCAGAAAG CAGAGGCAGG
  C
  GGATCTCTTA AGAGTTTGAG GCCAGCCTGG TCTATATAGC AAATTCCAGA CCAGACAGGG
  CCTGTGAGAG CCTGTCTCAG AAACAAAACA ACAAAAAGT                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss135897842	ENSMUSSNP4219153	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs45642849					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130489453 () rs orientation: forward

Symbol	Name	Function Class
Gm65113	predicted gene, 65113	1206 bp downstream
Ostc	oligosaccharyltransferase complex subunit (non-catalytic)	113 bp downstream
Rr398016	regulatory region 398016	1465 bp downstream
Rr585194	regulatory region 585194	1451 bp distal
Rr585195	regulatory region 585195	1570 bp distal
Rr585196	regulatory region 585196	735 bp distal