rs45644906 SNP Detail

Summary

• ID
  rs45644906
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:43924250 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGCAGCTC CTACTGATTC
  ATCTCCCCAG CCCTTCAAAG GCACGTGCGC ACGCTTGCAC ACACACACAC ACACACACAC
  ACACACACAC ACACACACAC GTATACATCT GAGAACTGGG TAGAAAATGG GTTTGTTTGC
  TGAGAATGTA CAGGAATGGA GGCTGTCCAT CGGTTAAGTA CCTATTCTGG TGTAACTGTC
  Y
  GGTTGCGTCT CCGGAGTCAG CAGAGTGTGG CTGGGCTTGG CCAGTGTGAA CAAGGGTTGT
  CAGCTTTGAG GTTTGATCCT TTTCTAGCTC AGGTAGTAGG TAGCTATGTT CTGATTTGCC
  ACCACTTAGT GGTGGTCACT CACTCACACC GAGCAACTGG ACATCTCCTC CCAGTTGCTG
  TTTACATTAA CTTCATTTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62746790	NES17342839	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45644906					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62746790	NES17342839	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:43924250 () rs orientation: forward

Symbol	Name	Function Class
Pla2g7	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	1157 bp downstream
Rr527133	regulatory region 527133	1330 bp distal
Rr527134	regulatory region 527134	1559 bp distal
Tdrd6	tudor domain containing 6	1976 bp downstream
Tssr144714	transcription start site region 144714	1963 bp downstream
Tssr144715	transcription start site region 144715	1409 bp downstream
Tssr148139	transcription start site region 148139	1303 bp upstream
Tssr148140	transcription start site region 148140	1253 bp upstream
Tssr148141	transcription start site region 148141	1202 bp upstream
Tssr148142	transcription start site region 148142	1156 bp upstream