rs45646899 SNP Detail

Summary

• ID
  rs45646899
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:66998487 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTTTAAAC ATGACTGCTT
  CCTTCTACAA ACCAACTTTA CCTACATTGT TTGGGATTAA AGGTGTGTAC TAAGGGCATG
  CCTGTATTCC AGCCACATCA TACTGTAATC CAGGGCATGT CTGCATTCTA GATGACCACA
  CAGGTCTTTG GAAGTGATCC CTTGCCAGAG CAGCCATGTT GTTAGATCAA AATTCCTGTC
  Y
  ATCTGATTCC TCTGCTATCA CAGCAACTGA ACGACCCCCT GTGCGGTGTG CAGGCTCACT
  CTGCAAATTC ACTGTTCCAG GATGACTAAG CTTGGATGAC AACTGCATCT GTCAGACTTG
  AAGACAAGGA GGATTGGTCC TGAAGTTTTC TCTTCCTTTA GTGAGGCCGT GTCCTCTGCC
  AACACTCATA TAATGGGGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss62440241	NES17246800	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs45646899					SNP	T	T	T	C	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62440241	NES17246800	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:66998487 () rs orientation: forward

Symbol	Name	Function Class
Adra1a	adrenergic receptor, alpha 1a	within coordinates
Rr290067	regulatory region 290067	914 bp proximal
Rr296052	regulatory region 296052	920 bp proximal
Rr389792	regulatory region 389792	1617 bp upstream