rs45647010 SNP Detail

Summary

• ID
  rs45647010
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:153537710 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAGGGCTG TACAGAACTG
  GTCCTACCCT TCACCTGGGC ATTGAGAGGA GCTGGTCTTA GAGGCACAAG AGTGGGAAAG
  CTGATTCTGC CCATAGCCAG CCACAGCACT CTGGAGAGTC GGCCCTGCAC ATTGTGGGAG
  TTGCAGGTTA GCTGGTCCTG AGGATGCAAG CTTGGGAGAA ATGGCCCTAC CACTAGTCTC
  Y
  CTGTGGCTTG GATGAGAGAG GGGGCAGGGG AGGGGGGGGG TCACCCCCTT CTGCGGCAGG
  CAGGAAAGCT GACCTTGACA GAATCATGAG AGCAGGAGAA GGGCCTTTCC CTTTACCTGC
  TGCAGTACTT GGAAGAGCAG GCCCTGCACC TTATCTGGGC AGCACAATGG AGCTGGTCAT
  AGATATGAGG GTTATGGGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136114005	ENSMUSSNP1085678	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs45647010					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153537710 () rs orientation: forward

Symbol	Name	Function Class
Gm25757	predicted gene, 25757	781 bp downstream
Rr587767	regulatory region 587767	1463 bp distal
Rr587768	regulatory region 587768	1320 bp distal
Rr587769	regulatory region 587769	1129 bp distal
Rr587770	regulatory region 587770	within coordinates
Rr587771	regulatory region 587771	848 bp distal
Rr587772	regulatory region 587772	242 bp distal