rs45647825 SNP Detail

Summary

• ID
  rs45647825
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:75699743 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGGG CAAGCTCCAG GCCAGAACCT
  S
  TCTTAAAAAC AAGGTGAACA AAACC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss145963263	ENSMUSSNP6053491	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C
ss325451898	CHEV_17_75792088	CHEVERUD	SCREENING_POP	f	SNP			G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs45647825					SNP	G	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:75699743 () rs orientation: forward

Symbol	Name	Function Class
Ltbp1	latent transforming growth factor beta binding protein 1	236 bp downstream
Rr392951	regulatory region 392951	581 bp upstream
Rr531033	regulatory region 531033	289 bp distal
Tssr145877	transcription start site region 145877	1784 bp downstream