rs45650537 SNP Detail

Summary

• ID
  rs45650537
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:65290491 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGATGGCAGT ATAAAAAGCC AAGATGCAGA TTGTCAATAT
  TAAGGAAACC TAGAAAATTC AGCATGATTT GCTGTTTCCC CAGACCCAGA GTAGCACTGG
  Y
  GAAGCCCTTG ATCCCTTCTC AGGCTGTCCA CCAAAACCAG GCTGAACCCC ATTTCCCTGT
  TGATTTGTTT CTTAAGGCTG AACAACTGGG TGAGCGCAGG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60626198	NES16299288	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs45650537					SNP	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60626198	NES16299288	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:65290491 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm45345	predicted gene 45345			395 bp upstream
Klhl2	kelch-like 2, Mayven			Intron
				Noncoding-Transcript-Variant
Rr664189	regulatory region 664189			1828 bp distal
Tssr81430	transcription start site region 81430			468 bp downstream