rs45651128 SNP Detail

Summary

• ID
  rs45651128
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:29979324 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGAT TTGTAAATGC AAAACCATTT
  M
  CCGGGAGTTA GAACTAAAAT AAAGC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60991480	NES16140572	PERLEGEN	MM_PANEL2	f	SNP	C	A	A	A	A	C	C	A	C	C		C	C	C	C		C
ss322132940	CHEV_7_31064918	CHEVERUD	SCREENING_POP	f	SNP											C					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs45651128					SNP	C	A	A	A	A	C	C	A	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60991480	NES16140572	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:29979324 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
1700020L13Rik	RIKEN cDNA 1700020L13 gene			1134 bp upstream
Cpgi18786	CpG island 18786			within coordinates
Rr400235	regulatory region 400235			367 bp upstream
Rr644765	regulatory region 644765			within coordinates
Rr644766	regulatory region 644766			144 bp proximal
Rr644767	regulatory region 644767			510 bp proximal
Rr644768	regulatory region 644768			999 bp proximal
Rr644769	regulatory region 644769			1946 bp proximal
Tssr65667	transcription start site region 65667			188 bp upstream
Tssr65668	transcription start site region 65668			287 bp upstream
Tssr65669	transcription start site region 65669			635 bp upstream
Tssr71721	transcription start site region 71721			436 bp downstream
Wdr62	WD repeat domain 62			Intron
				Noncoding-Transcript-Variant