rs45651171 SNP Detail

Summary

• ID
  rs45651171
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:94226198 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGCTGGAA AAAGTTAAAA
  ACAACAACTT TTAATGATAA AATTGACAAG GTAAGGCATA AGGTTAGATT TTTGCATTAT
  ACTTGTTGTA TATAACGTCT TTAGGAAGTG TGCCCAGGAT TGCTAGGTTT TACAGAGGAG
  TGATAACAAG GCAGGAAAGC AGCGCGTTTA TGTTTCCTGC GACTGTAAAG GCAGTTACCA
  Y
  TGTGATCCAA GGCCAGTGTC TCAGTGCTCG CTTTCCTCAT CCGTATCTTA GGTTGTGCCT
  GAAGTATTAG TTCTCTGAAG AGTGCCGAGG TGTCTGTCAG CAGACAGTTT TAATGAACAA
  AGTCTCAACA TTTACTGTTT ATCATGGGGG GTGTCTGCAA TTATTGAGAA CACATGAAAG
  GAGCTATAAG TTTTTGGTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60515589	NES16522988	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45651171					SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60515589	NES16522988	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:94226198 () rs orientation: forward

Symbol	Name	Function Class
Tssr139547	transcription start site region 139547	232 bp downstream
Tssr139548	transcription start site region 139548	845 bp upstream
Ttc3	tetratricopeptide repeat domain 3	within coordinates