rs45651425 SNP Detail

Summary

• ID
  rs45651425
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:78076783 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGCCAAGA TGAAAGACCA
  AAAAAGCCAA GTATCTTTCT ATGTAGCCAT GGCTGTCCTG GAACTCACTC TGTAGACGAG
  ACTGACCTCG AACTTAGAGA TCTGCCTGCC TCTGCCTACC AAGGGCTGGG ACTAAAGACG
  CACGCCACCA CACCCAGTGA CTTTTTTTTT TTTAAACTGA GAGTGAAGGT TGTATTCAGC
  W
  GCATTTTCCA CACCTGACTA GGAGCAGCTC ATAAACGCCG CAGGCCAACT TCTCATGACG
  ATTTTAGGAG TAGGGAAGCT TTGGGGGGTG GGGAGGGGAT CTAAACTGTA AGACGTCACA
  CTCGCCAGGA TGTTATGTTC AGACTGTGCC ACGGCTCAGC CCCCATCTTG TGTGGCGTGT
  CTTGAGGTTG GGACCTCTGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61428140	NES16805406	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	A	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45651425					SNP	T	T	T	T	A	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61428140	NES16805406	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:78076783 () rs orientation: forward

Symbol	Name	Function Class
Cilk1	ciliogenesis associated kinase 1	within coordinates
Rr683495	regulatory region 683495	408 bp distal
Tssr86265	transcription start site region 86265	668 bp downstream