rs45652673 SNP Detail

Summary

• ID
  rs45652673
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:84513133 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATCAAAAG CTCTGAAATC
  ATAAAGCACT GTAACACCTA CTGCATGCTT AGGCAAATCA CTTGCTCCAT GTCTGTTTCT
  CCATCAGTGT GTGTATCTCT GTGATGTAAT TTTATTAAGG CTTAGATGAA ATACCACAAG
  AGGGAACACA CTTTCTACCA GCATTTAAGT GATGAATACA TACAAACCTT GAAACATGTA
  Y
  AAGTCCATAA TCTAAATCGA CGCAGCAGGC GTCCCTGGAA CACGCCACCT CCTCAGCTAT
  CATCCCACCC TAACCACCCA CACAACCCAG ACGTGGCCAG CAGGCTGGGT CTTCCCGGAT
  GCCCAACTCT ACTAGCTGAC CTCTTGGCAT CACAGATGGA TTATTCCTGA CCAACATTTC
  CAGTCATTCC AAAAATTCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss60500099	NES16522423	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs45652673					SNP	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60500099	NES16522423	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:84513133 () rs orientation: forward

Symbol	Name	Function Class
Mir155hg	Mir155 host gene (non-protein coding)	1000 bp downstream
Mrpl39	mitochondrial ribosomal protein L39	1935 bp downstream
Rr518522	regulatory region 518522	1899 bp distal
Rr518523	regulatory region 518523	50 bp distal
Tssr139174	transcription start site region 139174	1257 bp downstream
Tssr139175	transcription start site region 139175	1158 bp downstream
Tssr139176	transcription start site region 139176	625 bp downstream