rs45652970 SNP Detail

Summary

• ID
  rs45652970
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:55066782 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGCCAGAAA CAGAGGCCGC
  TCTCTGAGCG TGCGCACCCG GGAGCGCGCG CCGCACTGTA GCACGTACTT CAACTGCCAC
  CTATATGAGA CTGCGAGGGG CATTATGGGA GTGGGCGGGG CCAGGGCGGG CTCCCGGCGG
  CTTCCTTAAA AAGCCAGCGA AACCGCGGGG AAGACTAAAC GCGGAAGAGG ATGGCTACTT
  Y
  CCAAGAGGGC TGTAGCCTGT CCGGCCAGTG GTGGGTAACG TGCCGTTAAT TCAAGCACTC
  GGAAGAGAAG AGGCAGTTCG AGGCCAGCCT GGTCTACAAA GAGAGTTCCC GAAGCCAGGG
  CTGTACAGAC AAAGCCTGTC TTTAATAAAA CCAAAGGAGC CTGGCAGTGG TGGCGCACCC
  CTTTAATCCC AGCACTTGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60734991	NES16375817	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45652970					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60734991	NES16375817	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:55066782 () rs orientation: forward

Symbol	Name	Function Class
Cpgi259	CpG island 259	within coordinates
Gm71172	predicted gene, 71172	within coordinates
Rr371303	regulatory region 371303	within coordinates
Rr411122	regulatory region 411122	1779 bp distal
Rr411123	regulatory region 411123	559 bp distal
Rr411124	regulatory region 411124	153 bp distal
Rr411125	regulatory region 411125	106 bp distal
Rr411126	regulatory region 411126	within coordinates
Rr411127	regulatory region 411127	1219 bp proximal
Sf3b1	splicing factor 3b, subunit 1	142 bp upstream
Tssr6707	transcription start site region 6707	1247 bp downstream
Tssr6708	transcription start site region 6708	23 bp downstream
Tssr11708	transcription start site region 11708	217 bp upstream
Tssr11709	transcription start site region 11709	139 bp upstream