rs45653344 SNP Detail

Summary

• ID
  rs45653344
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:136722177 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCTA CAGGTTTTAT CTCTTGTGCC
  Y
  AGGCACCCAG AAGAGCCCGC AAGAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss144517335	ENSMUSSNP3328370	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
ss321700217	CHEV_5_137169193	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs45653344					SNP	T	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:136722177 () rs orientation: forward

Symbol	Name	Function Class
Gm71524	predicted gene, 71524	within coordinates
Myl10	myosin, light chain 10, regulatory	within coordinates
Rr120856	regulatory region 120856	1711 bp proximal
Rr127468	regulatory region 127468	1177 bp distal
Rr127469	regulatory region 127469	177 bp distal
Tssr49256	transcription start site region 49256	1794 bp downstream
Tssr49257	transcription start site region 49257	486 bp downstream
Tssr49258	transcription start site region 49258	353 bp downstream
Tssr49259	transcription start site region 49259	293 bp downstream
Tssr49260	transcription start site region 49260	219 bp downstream
Tssr49261	transcription start site region 49261	273 bp upstream
Tssr49262	transcription start site region 49262	291 bp upstream
Tssr49263	transcription start site region 49263	334 bp upstream
Tssr49264	transcription start site region 49264	344 bp upstream
Tssr49265	transcription start site region 49265	798 bp upstream
Tssr49266	transcription start site region 49266	820 bp upstream
Tssr49267	transcription start site region 49267	890 bp upstream
Tssr49268	transcription start site region 49268	1868 bp upstream
Tssr49269	transcription start site region 49269	1881 bp upstream
Tssr49270	transcription start site region 49270	1892 bp upstream
Tssr49271	transcription start site region 49271	1917 bp upstream