rs45654842 SNP Detail

Summary

• ID
  rs45654842
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:94392545 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCTG GGAAAGTGGT CAGGAGGCCC
  T
  GTACATTCCT CCCCTCCTAC GCCCC                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	LG/J	SM/J
ss135505519	ENSMUSSNP6069654	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss320840249	CHEV_3_94289160	CHEVERUD	SCREENING_POP	f	SNP		T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	LG/J	SM/J
rs45654842					SNP	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:94392545 () rs orientation: forward

Symbol	Name	Function Class
Celf3	CUGBP, Elav-like family member 3	within coordinates
Cpgi13484	CpG island 13484	872 bp distal
D3Umi4	DNA segment, Chr 3, University of Michigan 4	within coordinates
Gm65215	predicted gene, 65215	1019 bp upstream
Gm65218	predicted gene, 65218	266 bp upstream
Rr580639	regulatory region 580639	1030 bp distal
Rr580640	regulatory region 580640	529 bp distal
Rr580641	regulatory region 580641	within coordinates
Tssr30454	transcription start site region 30454	903 bp downstream
Tssr30455	transcription start site region 30455	887 bp downstream
Tssr30456	transcription start site region 30456	830 bp downstream
Tssr30457	transcription start site region 30457	1066 bp upstream
Tssr30458	transcription start site region 30458	1094 bp upstream
Tssr34391	transcription start site region 34391	1010 bp upstream