rs45655054 SNP Detail

Summary

• ID
  rs45655054
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:91053510 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTTAAAGT TTATTTTAAT
  AATGTTTAAT GTGTTCAATT AAAGTTATTT AACTTATATA GTTGGAAGGT GATAAATTTT
  TAAACCTATT TATTCATTAG TTTCTGGGGA GAGGGTGAGT TGGGAACTAG CTACATCCCA
  CCCACACAGT GAAAGAGACT GGGGATAAGG GGTGGGGGTG GGGACAAATA GATGCAGTCG
  R
  ATGGCTTTCA TGGAAGGAGT GTGCATGTTC ACATCATTTT TTTGTAAGCA CCGAGGAGAG
  TAGAACAGCT GTTATTTAGG TTTCAGTGTT TGTAAACTGT ATGTACAACA TTTTTGATGC
  TGGATTTCAA TGTAATGTTG TGAGTAACCC TTGGACATTT TATGTCTTCC TCGTAAGGCA
  CAGTGCCTTG CTTAGCAATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61198247	NES16702746	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45655054					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61198247	NES16702746	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:91053510 () rs orientation: forward

Symbol	Name	Function Class
Cxcl2	C-X-C motif chemokine ligand 2	within coordinates
Tssr47224	transcription start site region 47224	1942 bp downstream
Tssr47225	transcription start site region 47225	1840 bp downstream
Tssr47226	transcription start site region 47226	1771 bp downstream
Tssr47227	transcription start site region 47227	1577 bp downstream
Tssr47228	transcription start site region 47228	1514 bp downstream
Tssr47229	transcription start site region 47229	1493 bp downstream
Tssr47230	transcription start site region 47230	1468 bp downstream
Tssr47231	transcription start site region 47231	1438 bp downstream
Tssr47232	transcription start site region 47232	1291 bp downstream
Tssr47233	transcription start site region 47233	1241 bp downstream
Tssr47234	transcription start site region 47234	1206 bp downstream
Tssr47235	transcription start site region 47235	448 bp downstream
Tssr47236	transcription start site region 47236	409 bp downstream
Tssr47237	transcription start site region 47237	389 bp downstream
Tssr47238	transcription start site region 47238	330 bp downstream
Tssr47239	transcription start site region 47239	325 bp downstream
Tssr47240	transcription start site region 47240	306 bp downstream
Tssr47241	transcription start site region 47241	277 bp downstream
Tssr47242	transcription start site region 47242	252 bp downstream
Tssr47243	transcription start site region 47243	234 bp downstream
Tssr47244	transcription start site region 47244	195 bp downstream
Tssr47245	transcription start site region 47245	178 bp downstream
Tssr47246	transcription start site region 47246	124 bp downstream
Tssr47247	transcription start site region 47247	70 bp downstream
Tssr47248	transcription start site region 47248	11 bp downstream
Tssr47249	transcription start site region 47249	41 bp upstream
Tssr47250	transcription start site region 47250	179 bp upstream
Tssr47251	transcription start site region 47251	243 bp upstream
Tssr47252	transcription start site region 47252	295 bp upstream
Tssr51812	transcription start site region 51812	1424 bp upstream
Tssr51813	transcription start site region 51813	1407 bp upstream
Tssr51814	transcription start site region 51814	433 bp upstream
Tssr51815	transcription start site region 51815	387 bp upstream
Tssr51816	transcription start site region 51816	354 bp upstream