rs45656044 SNP Detail

Summary

• ID
  rs45656044
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:38702812 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCAGATGA AGGACCCAGG
  ATGTGGAGAC ATAGCAGCTT ATCCAAATCC ATCCTGCTAG AGAAGGGATT TGAACCAGCA
  GGTCCAGCAA ATGAGCAATG CTCATTTGTC CTGTTTTTGA AATGCAAACC AAATAAAACT
  ATGCATGCTA CAACTGAATA CTAAGCACAG ATGATGCCCC AGACCGAGGA AATAGCAGTT
  R
  ACAGAGACAA ACCCCAAGAA CATTGAATGC ACACGTTGCT TTGCTGTTAT CTCACTCAGG
  TGGGGAGACA GGGAGATGGG GACATGGGGA GACCCTGTGG CCCCATGTAG AGGAAGACGA
  TTCTGTGCAG TTAGCAAACC TCTACATTTC CACCAGGAAA CAGATACGTT TGGTAAAAAC
  AGGAGATGCT TTCTAACATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60719315	NES16354849	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45656044					SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60719315	NES16354849	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:38702812 () rs orientation: forward

Symbol	Name	Function Class
Aff3	AF4/FMR2 family, member 3	within coordinates
Rr366875	regulatory region 366875	1237 bp upstream
Rr409724	regulatory region 409724	612 bp distal
Rr409725	regulatory region 409725	504 bp proximal
Rr409726	regulatory region 409726	1214 bp proximal
Rr409727	regulatory region 409727	1812 bp proximal
Tssr11346	transcription start site region 11346	1191 bp downstream
Tssr11347	transcription start site region 11347	1203 bp downstream
Tssr11348	transcription start site region 11348	1216 bp downstream
Tssr11349	transcription start site region 11349	1274 bp downstream
Tssr11350	transcription start site region 11350	1292 bp downstream
Tssr11351	transcription start site region 11351	1861 bp downstream