rs45658873 SNP Detail

Summary

• ID
  rs45658873
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:54359091 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAAAACCA GAAGTCAAAT
  ATCTATGTAA CTAAGATGTA TCAGTTGCAT TTAGGCAGAG TTACTGTCTC TGTTGGATCT
  GGTCCTGCCC TGACCAAGGT CACTGGGCCA AAAGAAGTAG CTAGAATGTG TGAGGAGGCC
  CTAGGACAAG GCAACATGAG CTGGAGACAT GGATACCTTT TATAAAGCCC ACAGAGGAGA
  R
  TCTGTTTGCC AAGCAGGAGC CTGTGCTGCC GCCAGGGCAA GCACAGCAGG TTGTCATTTC
  TCTCACAAGA CACCACATGG GCTACGAGCT CCAAATTAAG CAACTGAGAG GTCAATGGAG
  AGGATACAAT TTTAAATTTG CCTGAAAGCC TTTTACAGAC CTTCTAACAC TACCCAAGGG
  GAAAGCACTT CAGGTAGAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62394286	NES17237536	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45658873					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62394286	NES17237536	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:54359091 () rs orientation: forward

Symbol	Name	Function Class
A430107P09Rik	RIKEN cDNA A430107P09 gene	within coordinates
A630038E17Rik	RIKEN cDNA A630038E17 gene	within coordinates
Gm30275	predicted gene, 30275	within coordinates
Rr292699	regulatory region 292699	310 bp proximal
Rr301183	regulatory region 301183	1034 bp distal
Tcra	T cell receptor alpha chain	within coordinates
Tcrd	T cell receptor delta chain	within coordinates
Trdd2	T cell receptor delta diversity 2	592 bp upstream
Trdj1	T cell receptor delta joining 1	1504 bp upstream
Tssr125528	transcription start site region 125528	1241 bp downstream
Tssr125529	transcription start site region 125529	143 bp downstream
Tssr125530	transcription start site region 125530	241 bp upstream
Tssr125531	transcription start site region 125531	273 bp upstream
Tssr125532	transcription start site region 125532	291 bp upstream
Tssr125533	transcription start site region 125533	403 bp upstream
Tssr125534	transcription start site region 125534	479 bp upstream
Tssr125535	transcription start site region 125535	508 bp upstream
Tssr125536	transcription start site region 125536	527 bp upstream
Tssr125537	transcription start site region 125537	556 bp upstream
Tssr125538	transcription start site region 125538	596 bp upstream
Tssr125539	transcription start site region 125539	1489 bp upstream
Tssr128533	transcription start site region 128533	1950 bp downstream