rs45660534 SNP Detail

Summary

• ID
  rs45660534
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:13011823 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTCTACAT ATCTTGCCTT
  TAGCTCAGCT GTGAGCATCT TTGCAAATGT ATTCCCAGCT TCTTGCTAAG ATTTCTCCTT
  CTTCCAGATG TGAGTCCTAT GCCTGGTGAT AATATCTAGT AGTCCCATTC ATCTGTAGCT
  CCCTTTCCCA CAAGTCTACA TTTGAGTGTA ACTCATATCT ACTCTCATAG CTAAGGCATG
  R
  ATCTCTCATC CCAGTCATAA TCCTCATACA CCTTTCTTCT CCCTAGGTGT ATCAAATGTG
  CAGCTGTTGC CCCTCAGATA TGACTGCCTT GAACTGCTAC TTTGATCTGT GTTTTTTGCT
  TCCCAGAGAT GCTCTTATCT CCAGATGTGC TGCCCATGTC CAGTCAGGGA TCATTCGCCT
  ACAGGGGTGT GGCCCACTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60970715	NES16158022	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45660534					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60970715	NES16158022	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:13011823 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18339	CpG island 18339	420 bp proximal
Lig1	ligase I, DNA, ATP-dependent	within coordinates
Rr400108	regulatory region 400108	744 bp upstream
Tssr64537	transcription start site region 64537	683 bp downstream
Tssr64538	transcription start site region 64538	627 bp downstream
Tssr64539	transcription start site region 64539	647 bp upstream
Tssr64540	transcription start site region 64540	881 bp upstream
Tssr64541	transcription start site region 64541	979 bp upstream
Tssr70659	transcription start site region 70659	764 bp downstream
Zswim9	zinc finger SWIM-type containing 9	within coordinates