rs45660903 SNP Detail

Summary

• ID
  rs45660903
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:158524829 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAACAAAAT GAGAGCAAAT
  AACTCGCTTC TGAAATCTTT TGGTCTCGCT GATACATGAT AAAAAGTCCC AGGACTCTCC
  TGAGGTTTTC TGAAAAACCA CTTTCATTTC TAAAACTGAA TTTTAAGGCA TATGAATAGT
  ATGATTTTAC TATCAAAAAC AAAGCATTTC AAAGGCCCCA TTTTTGATAC TTGAGCAATG
  Y
  TTCAGCTAAA TTCGGGTTTG CATTTCAACA ATAAGAATCT AGTGTAAGGA AATGGTTAAA
  ATATTAGACA GAAAAGCAAA GCAGGACTAT TAGAGACAAT GAAATAGTGC ATGAGTCCTC
  ATAATAACAG CGGAAACAGC ACTATCCATT AGGCTGGTAA CCAAGGGAAG GTATGGGTGT
  CTCAGAAACA AGAGCCCCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60333208	NES15837296	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45660903					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60333208	NES15837296	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:158524829 () rs orientation: forward

Symbol	Name	Function Class
Rr421480	regulatory region 421480	384 bp proximal