rs45661280 SNP Detail

Summary

• ID
  rs45661280
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:54813987 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTCCCCGTA GCCTGTAACC GAGTGTCGTC CGGGTTGCGC
  CCCACGTCTC TCCAAAGGAC CCGCTGTTCC CACCACGGCT CCGGTTAGAG CTCCGGGGCT
  R
  CCCAGGGCCG GGGGGTACGA GTGACGGCTC TCCTGGCAGC CGAATCCCAC GGACCGATGG
  GCACATAGTC GGTCCAGGGC AGCGTGGAGC TCCGGGTAG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss139565736	ENSMUSSNP2067321	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs45661280					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:54813987 () rs orientation: forward

Symbol	Name	Function Class
Ajuba	ajuba LIM protein	within coordinates
Cpgi6463	CpG island 6463	within coordinates
Gm63340	predicted gene, 63340	1065 bp upstream
Rr389677	regulatory region 389677	within coordinates
Rr404101	regulatory region 404101	1625 bp upstream
Rr492273	regulatory region 492273	1018 bp proximal
Rr492274	regulatory region 492274	1131 bp proximal
Rr492275	regulatory region 492275	1827 bp proximal
Tssr128601	transcription start site region 128601	822 bp upstream
Tssr128602	transcription start site region 128602	950 bp downstream
Tssr128603	transcription start site region 128603	997 bp downstream
Tssr128604	transcription start site region 128604	1013 bp downstream
Tssr128605	transcription start site region 128605	1031 bp downstream
Tssr128606	transcription start site region 128606	1048 bp downstream