rs45661466 SNP Detail

Summary

• ID
  rs45661466
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:24792495 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCCCAGCT TGTCTACTTC
  AGTCATGGAG AAATACTTAA TTCCCAGAGT TTTTATTATA TAGCTATAAA AGAACAGAGT
  GAAGTTAATG ACGGTTAGTA AGGCTGACTT TTCTTACATT TCCTTTGGGG GGAAAGATCA
  CTGTAAGTCC TGTGAACTGT GTATATATGC AGCTAGTTGT ATTTTAAGAG TAAACTGTTA
  Y
  AAATTGCCTA AATAATACTA TGTCTATAAG TGAATATAAA CACGTATGCT TATGTAAATA
  CATGCATATA TACATATATA CATAGTGACC AAAAAAAAAA AAAAAAAAAA ACAACCTCTT
  AACAGATTTG ACCAGTAAAG CATTCCTAGC ATATAAAAGA ACATGGAATA AACTTACTGT
  TCCCCAGGGT CTACGTCTCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss61262540	NES16880324	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs45661466					SNP	C	C	C	C	C	T	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61262540	NES16880324	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:24792495 () rs orientation: forward

Symbol	Name	Function Class
Arg1	arginase, liver	Intron
Tssr92746	transcription start site region 92746	960 bp downstream
Tssr92747	transcription start site region 92747	870 bp downstream
Tssr97085	transcription start site region 97085	1104 bp upstream
Tssr97086	transcription start site region 97086	1042 bp upstream
Tssr97087	transcription start site region 97087	1016 bp upstream
Tssr97088	transcription start site region 97088	956 bp upstream
Tssr97089	transcription start site region 97089	941 bp upstream
Tssr97090	transcription start site region 97090	910 bp upstream
Tssr97091	transcription start site region 97091	515 bp upstream
Tssr97092	transcription start site region 97092	496 bp upstream
Tssr97093	transcription start site region 97093	469 bp upstream
Tssr97094	transcription start site region 97094	458 bp upstream
Tssr97095	transcription start site region 97095	441 bp upstream
Tssr97096	transcription start site region 97096	156 bp upstream
Tssr97097	transcription start site region 97097	87 bp downstream
Tssr97098	transcription start site region 97098	235 bp downstream
Tssr97099	transcription start site region 97099	1350 bp downstream
Tssr97100	transcription start site region 97100	1388 bp downstream