rs45662680 SNP Detail

Summary

• ID
  rs45662680
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:21425293 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGGGGGGA GGGGTGTCTG
  TTTTTGTTGG GTTTTTTGTT GTTGTTTTTC GAGACAGGAT TTCTGTGTGT GGTCCTGGCT
  GTCCTGGAAC TCACTCTGTA GACCAGGCTG GCTTCACTGT GCTAATTTTT AAAAAACTCC
  TGATCCACTT TATCATAACA AGTTTTCAGG ATAAGTCCCA ATTTTAAGTA GTCTTCAACA
  Y
  TCACAAGTCA GTATTCAAAT TAAGATTCCA ATTTGAAATT CATCTTTGAT TTGACAATAG
  TCCATATCTT TAGGATAAAA TAACTCCACC TGGGGGAGAT GAAGAGCCAG AGGAACATCT
  CAGAGGGCCA TGCTGGATAA AAGCCTGCAG GGCAGAACTG GCACCTACAG CTTGGTGGTG
  ACCCATGCCT GCCATCCCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52314520	NES15371705	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45662680					SNP	T	C	C	C	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52314520	NES15371705	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:21425293 () rs orientation: forward

Symbol	Name	Function Class
Adam17	a disintegrin and metallopeptidase domain 17	1660 bp upstream
Cpgi4477	CpG island 4477	1085 bp distal
Gm49586	predicted gene, 49586	946 bp downstream
Tssr112932	transcription start site region 112932	1513 bp downstream
Tssr112933	transcription start site region 112933	1035 bp downstream
Tssr115856	transcription start site region 115856	1800 bp upstream
Tssr115857	transcription start site region 115857	1774 bp upstream
Tssr115858	transcription start site region 115858	1746 bp upstream
Tssr115859	transcription start site region 115859	1700 bp upstream
Tssr115860	transcription start site region 115860	1675 bp upstream