rs45663325 SNP Detail

Summary

• ID
  rs45663325
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:15076919 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             TCTGTAGAAC AGAGCTGAAG CTAAGGATTT AAATGTGGTC ACCGTCCCTG
  S
  AGGATTTGTT GGTCCTGGGT CTACAGTACT GTGATACAAG GTGACTCAGT           
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148695713	ENSMUSSNP3121148	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs45663325					SNP	C	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:15076919 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20129	CpG island 20129	329 bp proximal
Gm37844	predicted gene, 37844	within coordinates
Kbtbd11	kelch repeat and BTB (POZ) domain containing 11	within coordinates
Rr660168	regulatory region 660168	588 bp distal
Rr660169	regulatory region 660169	485 bp proximal
Rr660170	regulatory region 660170	1256 bp proximal
Tssr76486	transcription start site region 76486	248 bp upstream
Tssr76487	transcription start site region 76487	267 bp upstream
Tssr76488	transcription start site region 76488	380 bp upstream
Tssr76489	transcription start site region 76489	463 bp upstream
Tssr76490	transcription start site region 76490	840 bp upstream
Tssr76491	transcription start site region 76491	1039 bp upstream
Tssr76492	transcription start site region 76492	1835 bp upstream
Tssr80488	transcription start site region 80488	701 bp downstream