rs45663604 SNP Detail

Summary

• ID
  rs45663604
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:78077789 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGAGTCCT TTACTGTAAG
  GTTAATATTT ATTTTCTCTT TTCTGTATTA TGTATAAAAA GTAAATCTCA AATCCTGCTC
  GGCTAGCTGC CAAGCTGCCT GCAAGCTGTA GATACCATTA AGATACAGAA ATAAATCTCG
  AACCCCCATG GAGTCTCTGT AATCTAGCCA GTGTTAACTA AGGTCATTAT GTTCTTTTTT
  W
  AAATTGACAA GATCCCAGCT ACCCAGTTGT TTGACGCCAT GAAATTGTTT TCCTTCATGT
  TCTGTGGACC CTAACTTGGC TTCCCTTCCT TGACTAGCAA ACAGCTTCCC TTCTGAAGTT
  AGCCATGAAA GTTTACATGA GAGCGGCAGC TGTGCAGCTG AGCAAACCAG CTTACTGGAA
  AACCAAATTC TAAAGAACTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	PWD/PhJ
ss61428136	NES16805410	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	PWD/PhJ
rs45663604					SNP	A	A	A	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61428136	NES16805410	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:78077789 () rs orientation: forward

Symbol	Name	Function Class
Cilk1	ciliogenesis associated kinase 1	within coordinates
Tssr86265	transcription start site region 86265	1674 bp downstream