rs45664981 SNP Detail

Summary

• ID
  rs45664981
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:79991150 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAAGTGCA AAATGGGGTC
  CAAGTCCCAA AGAGAAGAGA AGAGGAGGCT CTCTCCACCC CTCACCATCA GATCTCCCGT
  ACCCCAAGTC ACCCTCAGAG GATAGGGAAA GTATTATACC TGAGAGGTCG GTTGGCTGGG
  CAAGATTCAT CCAACTGAAA AGCAGTCCCC CACACAGGCC TGTCAGCAGG AGCCCTGGAC
  Y
  TCTCCCCTGG AGGCCCATAA GAAGTCGCCT CCACCTCAGT CGTAGTCCTA GGAATCCAAC
  AGGGGTTCTA AGCCCTGGCT ACAGACAAGA AGGAAGCTGA AATTAAAGTC CCAAGATTTG
  CAGGGGTGAA AACTCCTCTA TTATAAGCTT GTGGAGAGAT GAGAGTGATT GGGTCCTATC
  ATCTGCTGGG AAATGTGAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145142252	ENSMUSSNP3339237	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss322281151	CHEV_7_87486288	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs45664981					SNP	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:79991150 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19331	CpG island 19331	904 bp distal
Cpgi19332	CpG island 19332	1481 bp proximal
Hddc3	HD domain containing 3	1702 bp upstream
Rr400403	regulatory region 400403	1001 bp downstream
Rr400404	regulatory region 400404	1541 bp upstream
Rr649870	regulatory region 649870	693 bp distal
Rr649871	regulatory region 649871	1034 bp distal
Rr649872	regulatory region 649872	365 bp distal
Rr649873	regulatory region 649873	1221 bp proximal
Rr649874	regulatory region 649874	1665 bp proximal
Tssr67435	transcription start site region 67435	1689 bp upstream
Tssr67436	transcription start site region 67436	1763 bp upstream
Tssr73215	transcription start site region 73215	1392 bp upstream
Tssr73216	transcription start site region 73216	1252 bp upstream
Tssr73217	transcription start site region 73217	1192 bp upstream
Tssr73218	transcription start site region 73218	1171 bp upstream
Unc45a	unc-45 myosin chaperone A	402 bp upstream