rs45665149 SNP Detail

Summary

• ID
  rs45665149
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:141153685 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTTTTCAC TAGTATAGTC
  CATACACCTT GCATGCATTT GATTAGAGAT GCTTCAAACA ACAGCATCTG GTCACATGGG
  ATCATTTCAT ATTTAATGAC AAGTACGAAA ATGTGGCAGA TTAGTTCCAG GAATCCACCC
  ACCCTCGTGT ACATTTCACT AATGCTCGGC TCCATTATAT CAAATAACTT AATGTTCACA
  Y
  GTAATATAAT CTAGACATAT CCTCCTGCAA ATGCTCCTTC ATCACCAGAA AGCTTACAAT
  GACCAGTAAT ACACAAGTGC TATATAAATA GCTGTTGTGT TATTGCTTAG GGGATGATGA
  AACACAACAG GTTGTGATGC TTTTTCCCTA AATGTTTAGC ATCTGTACTT GTTTGTACAG
  ATGTAGAGCC AGATATACAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136004436	ENSMUSSNP1480098	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
ss320992219	CHEV_3_141110888	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs45665149					SNP	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141153685 () rs orientation: forward

Symbol	Name	Function Class
Gm66152	predicted gene, 66152	within coordinates
Tssr32030	transcription start site region 32030	1271 bp upstream