rs45666116 SNP Detail

Summary

• ID
  rs45666116
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:13284771 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTCACTAC TTTTGGCTAA
  ATACCAAGTT GTTGTTTTTT CTTTTCTTTT CCCTCCCACA CATAACATTC TTTCTTGGGA
  TTTTTTTTTT CTCCTAAAGT GTGTGTGCGT GCGTGTGTGC TACTGAAAAA CATGACCTGC
  CTTGAACATG CATACTATCC TTTAAAACAG AGCTCTGTAA GAAATATTCC TCTCGGTACA
  Y
  GAAGCATCCT GAATAACAGC TGAGTCCACA CTTAACCCAA TTTGCTCAGA ACAACTTCCT
  CCAAATGGCA GACAAAACCA CCAGGGCAGG CTGGATGACA GGCTCCCTGA ACACACAGGC
  GTGGGAACGA AGTAGAGATT TAGATCTGAG GCCTTGTAGC TTTAGAGCAG CCAGCCCTAA
  CCCAAGGCCT TCCCCTGTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60327980	NES15829399	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45666116					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60327980	NES15829399	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:13284771 () rs orientation: forward

Symbol	Name	Function Class
Ncoa2	nuclear receptor coactivator 2	within coordinates
Rr370880	regulatory region 370880	267 bp upstream