rs45667577 SNP Detail

Summary

• ID
  rs45667577
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:56298109 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCCTGCCT CCACCTTCAG
  AGTGCTCAGT TTATAGCTCT GTGCTGCAAT GCCCAGTGCA GCTGCTATTG TTAAGGCAAT
  AAAAATGCAA ACATTTTCTC TCTGCGCAAC AACTGCCCAT CGTGTGTCTA GAATATGCCA
  AACTGTCCTA GTTCTAGAAA TAAAATATAA TAGAAGCCTT ATTTAGTAAA TGAGATTAGA
  R
  CTTTCATGGA TCAGTTTCCT AATGATGTCT GGTTCTGTTT TCTGGCTTTC ATTTTTTTGT
  TGTTGTTGTT GGGTGCAGGT TTCCTGGCTT GTTTTCAGTT TTGTGTATTG TTGTTGCTTA
  GGTTTAAAAG TAGAAAAAAA AAAGTAGAAA ACATCCTCTT TGTGCCTTGG TAGTAGCCAA
  CGTCCTCATC CCCCACTGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss52437193	NES15406616	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs45667577					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52437193	NES15406616	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:56298109 () rs orientation: forward

Symbol	Name	Function Class
Gm19990	predicted gene, 19990	1919 bp upstream
Gm25917	predicted gene, 25917	991 bp downstream
Gm47682	predicted gene, 47682	within coordinates
Rr256861	regulatory region 256861	892 bp proximal
Rr260934	regulatory region 260934	509 bp distal
Rr267727	regulatory region 267727	293 bp proximal
Tssr113509	transcription start site region 113509	1823 bp upstream
Tssr113510	transcription start site region 113510	1864 bp upstream
Tssr113511	transcription start site region 113511	1904 bp upstream
Tssr113512	transcription start site region 113512	1926 bp upstream