rs45668875 SNP Detail

Summary

• ID
  rs45668875
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:66901871 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TACAA CTAATTTATC AGATGGGGCC
  C
  ACGCCTGGAC GCCTGAGTCG GGATG                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss144520341	ENSMUSSNP5370769	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss319758732	CHEV_1_66909286	CHEVERUD	SCREENING_POP	f	SNP		C	C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs45668875					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:66901871 () rs orientation: forward

Symbol	Name	Function Class
Acadl	acyl-Coenzyme A dehydrogenase, long-chain	within coordinates
Cpgi339	CpG island 339	within coordinates
Rr412477	regulatory region 412477	583 bp distal
Rr412478	regulatory region 412478	within coordinates
Rr412479	regulatory region 412479	555 bp proximal
Tssr12011	transcription start site region 12011	542 bp downstream
Tssr12012	transcription start site region 12012	553 bp downstream
Tssr12013	transcription start site region 12013	583 bp downstream
Tssr12014	transcription start site region 12014	588 bp downstream
Tssr12015	transcription start site region 12015	605 bp downstream
Tssr12016	transcription start site region 12016	629 bp downstream