rs45669568 SNP Detail

Summary

• ID
  rs45669568
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:46036382 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTAACAAC CATCTCTGGT
  CTCCTGGCAC CCTGTCCCCA AGAGAGAGGG GAGGACCGAT TACCTGGGTG TCAGTAGGGC
  AGGCCCCTTT GAAGACTGTC TCGAAGTTGT CCCAGTAAGC CAGCCTCAGG GAGCTGCCAC
  AGCTGAGGTA CCACCATTAG CTGGACCCTT GTGGGAGAGC CCTTCCATGA CATCATCAGT
  Y
  AGACTCTAGG CATCAAAACT ATCAAGTCAG GCTGTTGAAC AGGATTAGAG CACTGAGTGC
  CGAAACTTCT AGGCATCTCT GCTCTTCCCA AGCAGAGTGA CTTTGTGGAA GCTGTGTATC
  TTCTCTGCTT TGAGGAGATC ATCTGCTGAA TTCGGAGCAT GGCTGTCTCC GGCCTCTGGA
  CTTGAGAGCG AAGTGAGATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60259595	NES15753056	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45669568					SNP	C	C	T	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60259595	NES15753056	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:46036382 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9206	CpG island 9206	1016 bp distal
Gm35456	predicted gene, 35456	within coordinates
Rr331486	regulatory region 331486	582 bp distal
Rr331487	regulatory region 331487	1419 bp proximal
Rr339880	regulatory region 339880	781 bp distal
Rr339881	regulatory region 339881	618 bp proximal