rs45669591 SNP Detail

Summary

• ID
  rs45669591
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:56300485 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCTGTCAT GTGGAGTCAT
  TAAGAGGGGC ACAGCTTCTT AGAATCTCCT TCAGCTCCTC TGGATTTAAA GGAATTTACA
  GGGAAACTTC CAAGACACCT TAGCTATATC CAAATGAAAG CCAAAGCATT ATAGTTTGGC
  AGGGCTGAAA GTGTGTCTCT GAAAGGGGGA AAAAATTGTA TGAAGCTACA GAGAAAAAAA
  Y
  GTCTGGGCAT TAGCTTCTAT TTCCTTTAAG GGATGGGAGA GTGCTCTGAG ATTGTTCCAT
  TCAATTTAAA GTTAACTACA AATGTGAAAG GCTGGGGTAC GTTAATAAGA TGATCCACCT
  GCTTATAATA ATAGGATAAT TCACATCCTC TTTGTCAGAG CGGTGAGGCT CCCGACCAGG
  TCAGTCATTA AACTCAATGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52437174	NES15406602	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C		C	C	C	C		T
ss324047700	CHEV_12_57354687	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs45669591					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52437174	NES15406602	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:56300485 () rs orientation: forward

Symbol	Name	Function Class
Gm19990	predicted gene, 19990	within coordinates
Gm25917	predicted gene, 25917	1256 bp upstream
Gm47682	predicted gene, 47682	within coordinates
Rr256861	regulatory region 256861	1085 bp distal
Rr267727	regulatory region 267727	285 bp distal
Rr267728	regulatory region 267728	516 bp proximal
Tssr113509	transcription start site region 113509	538 bp downstream
Tssr113510	transcription start site region 113510	488 bp downstream
Tssr113511	transcription start site region 113511	452 bp downstream
Tssr113512	transcription start site region 113512	439 bp downstream